Left CSF+GREY Mask

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

5 - Compute Grey white Interface Mesh
Ana Get Opened Hemi Surface
Compute Cortex image
Cortical Fold Arg (3.0)
Get Hemi Surface
Get Spherical Brain Hull
Get Spherical Hemi Surface
Grey white Interface
Grey White Surface 2012
Simplified Morphologist 2015
Surface Deformation
Surface Deformation (Utrecht)

Associated formats

Aperio svs
BMP image
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIF image
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
PBM image
PGM image
PNG image
PPM image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
VIDA image
XBM image
XPM image
Zeiss czi

Associated ontology rules

  • flat :
    • ./Lcortex_<filename>
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Lcortex_<subject>
  • brainvisa-3.0 :
    • {protocol}/{subject}/segment/Lcortex_<subject>
    {protocol}/{subject}/segment/Lcortex_<subject>_*
    {protocol}/{subject}/segment/{acquisition}/Lcortex_<subject>
    {protocol}/{subject}/segment/{acquisition}/Lcortex_<subject>_*
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Lcortex_<subject>

    Key attributes

  • brainvisa-3.2.0 :
    • rescan ,  acquisition_date ,  time_point ,  time_duration ,  center ,  subject ,  acquisition ,  analysis
  • brainvisa-3.0 :
    • protocol ,  subject ,  filename_variable ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis